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Applied Neuroscience

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Journal Articles


Automatic phoneme category selectivity in the dorsal auditory stream
M. A. Chevillet, J. Jiang, J. P. Rauschecker, and M. Riesenhuber
Journal of Neuroscience,33(12):5208–5215 (2013)

Detection and recognition of 3-D targets in panchromatic and in synthetic aperture radar imagery using a map-seeking circuit algorithm
P. K. Murphy, P. A. Rodriguez, and C. K. Peterson
Johns Hopkins APL Technical Digest, 31(3):234–253 (2013)

Revolutionizing prosthetics - phase 3
A. D. Ravitz, M. P. McLoughlin, J. D. Beaty, F. V. Tenore, M. S. Johannes, S. A. Swetz, J. B. Helder, K. D. Katyal, M. P. Para, K. M. Fischer, T. C. Gion, and B. A. Wester
Johns Hopkins APL Technical Digest, 31(4):366–376 (2013)

Behavioral demonstration of a somatosensory neuroprosthesis
J. Berg, J. Dammann, F. Tenore, G. Tabot, J. Boback, L. Manfredi, M. Peterson, K. Katyal, M. Johannes, A. Makhlin, R. Wilcox, R. Franklin, R. J. Vogelstein, N. Hatsopoulos, and S. Bensmaia
IEEE Transactions on Neural Systems and Rehabilitation Engineering, 21(3):500–507 (2013)

Graph classification using signal subgraphs: applications in statistical connectomics
J. T. Vogelstein, W. R. Gray, R. J. Vogelstein, and C. E. Priebe
IEEE Transactions on Pattern Analysis and Machine Intelligence, 35(7):1539–1551 (2013)

Advancing Information Superiority Through Applied Neuroscience
R. J. Vogelstein
Johns Hopkins APL Tech Dig, 31(4):325–332 (2013)


De-noising, phase ambiguity correction and visualization techniques for complex-valued ICA of group fMRI data
P. A. Rodriguez, V. D. Calhoun, and T. Adali
Pattern Recognition, 45(6):2050–2063 (2012)

The Effects of Targeted Muscle Reinnervation on Neuromas in a Rabbit Rectus Abdominis Flap Model
P. S. Kim, J. H. Ko, K. K. O’Shaughnessy, T. A. Kuiken, E. A. Pohlmeyer, and G. A. Dumanian
Journal of Hand Surgery, 37(8):1609–1616 (2012)

Classification of unit types in the anteroventral cochlear nucleus of laboratory mice
M. J. Roos and B. J. May
Hearing Research, 289(1–2):13–26 (2012)

Magnetic Resonance Connectome Automated Pipeline: An Overview
W. R. Gray, J. A. Bogovic, J. T. Vogelstein, B. A. Landman, J. L. Prince, and R. J. Vogelstein
IEEE Pulse, 3(2):42–48 (2012)


Dysregulation of limbic and auditory networks in tinnitus
A. M. Leaver, L. Renier, M. A. Chevillet, S. Morgan, H. J. Kim, and J. P. Rauschecker
Neuron, 69(1):33–43 (2011)

Functional correlates of the anterolateral processing hierarchy in human auditory cortex
M. A. Chevillet, M. Riesenhuber, and J. P. Rauschecker
Journal of Neuroscience, 31(25):9345–9352 (2011)

Quality map thresholding for de-noising of complex-valued fMRI data and its application to ICA of fMRI
P. A. Rodriguez, N. Correa, T. Eichele, V. D. Calhoun, and T. Adali
Journal of Signal Processing Systems, 65:497–508 (2011)

Application of independent component analysis with adaptive density model to complex-valued fMRI data
H. Li, N. Correa, P. A. Rodriguez, V. D. Calhoun, and T. Adali
IEEE Transactions Biomedical Engineering, 58(10):2794–2803 (2011)

Development and characterization of a packaged mechanically actuated microtweezer system
B. A. Wester, J. D. Ross, S. Rajaraman, and M. G. Allen
Sensors and Actuators, 167(2)502–511 (2011)

Enhancers in embryonic stem cells are enriched for transposable elements and genetic variations associated with cancers
L. Teng, H. Firpi, and K. Tan
Nucleic Acids Research, 39(17):7371–7379 (2011)

Closing the loop in cortically-coupled computer vision: a brain-computer interface for searching image databases
E. A. Pohlmeyer, J. Wang, D. C. Jangraw, B. Lou, S. F. Chang, and P. Sajda
Journal of Neural Engineering, 8(3):036025 (2011)

Impairments of the medial olivocochlear system increase the risk of noise-induced auditory neuropathy in laboratory mice
B. J. May, A. M. Lauer, and M. J. Roos
Otology and Neurotology, (32)9:1568–1578 (2011)

Mental encoding and neural decoding of abstract cognitive categories: a commentary and simulation
M. Vindiola and M. Wolmetz
NeuroImage, 54(4):2822–2827 (2011)

What does the right hemisphere know about phoneme categories?
M. Wolmetz, D. Poeppel, and B. Rapp
Journal of Cognitive Neuroscience, 23(3):552–569 (2011)

A real-time virtual integration environment for neuroprosthetics and rehabilitation
R. S. Armiger, F. V. Tenore, W. E. Bishop, J. D. Beaty, M. M. Bridges, J. M. Burck, R. J. Vogelstein, and S. D. Harshbarger
Johns Hopkins APL Technical Digest, 30(3):198–206 (2011)

Are mental properties supervenient on brain properties?
J. T. Vogelstein, R. J. Vogelstein, and C. E. Priebe
Nature Scientific Reports, 1:100 (2011)

Towards a cortical prosthesis: Implementing a spike-based HMAX model of visual object recognition in silico
F. Folowosele, R. J. Vogelstein, and R. Etienne-Cummings
IEEE Journal on Emerging and Selected Topics in Circuits and Systems, 1(4):516–525 (2011)

Revolutionizing prosthetics: Devices for neural integration
F. V. Tenore and R. J. Vogelstein
Johns Hopkins APL Technical Digest, 30(3):230–239 (2011)

Designing Tyrosine-Derived Polycarbonate Polymers for Biodegradable Regenerative Type Neural Interface Capable of Neural Recording
D. Lewitus, R. J. Vogelstein, G. Zhen, Y.-S. Choi, J. Kohn, S. Harshbarger, and X. Jia
IEEE Trans Neural Syst Rehabil Eng, 19(2):204–212 (2011)

Toward a Wearable, Neurally-Enhanced Augmented Reality System
D. H. Goldberg, R. J. Vogelstein, D. A. Socolinsky, and L. B. Wolff
Lecture Notes in Computer Science, 6780:493–499 (2011)


Discover regulatory DNA elements using chromatin signatures and artificial neural network
H. Firpi, D. Ucar, and K. Tan
Bioinformatics, 26(13):1579–1586 (2010)

Comparison of Manual and Automated Determination of Hippocampal Volumes in MCI and Early AD
L. Shen, A. Saykin, S. Kim, H. Firpi, J. West, S. Risacher, B. McDonald, T. McHugh, H. Wishart, and L. Flashman
Brain Imaging and Behavior, 4(1):86–95 (2010)

In a blink of an eye and a switch of a transistor: Cortically coupled computer vision
P. Sajda, E. A. Pohlmeyer, J. Wang, L. C. Parra, C. Christoforou, J. Dmochowski, B. Hanna, C. Bahlmann, M. K. Singh, and S. Chang
Proceedings of the IEEE, 98(3):462–478 (2010)

Research Program in Applied Neuroscience
R. J. Vogelstein
Johns Hopkins APL Tech Dig, 28(3):222–223 (2010)


Development and characterization of in vivo flexible electrodes compatible with large tissue displacements
B. A. Wester, R. H. Lee, and M. C. LaPlaca
Journal of Neural Engineering, 6(2):024002 (2009)

Parametric surface modeling and registration for comparison of manual and automated segmentation of the hippocampus
L. Shen, H. Firpi, A. Saykin, and J. West
Computational Anatomy and Physiology of the Hippocampus, 19(6):588–595 (2009)

Baseline MRI predictors of conversion from MCI to probable AD in the ADNI cohort
S. Risacher, A. Saykin, J. West, L. Shen, H. Firpi, B. McDonald, and the Alzheimer’s Disease Neuroimaging Initiative (ADNI)
Current Alzheimer Research, 6(4):347–361 (2009)

Toward the restoration of hand use to a paralyzed monkey: brain-controlled functional electrical stimulation of forearm muscles
E. A. Pohlmeyer, E. R. Oby, E. J. Perreault, S. A. Solla, K. L. Kilgore, R. F. Kirsch, and L. E. Miller
PLoS One, 4:6 (2009)

A fully implanted drug delivery system for peripheral nerve blocks in behaving animals
E. A. Pohlmeyer, L. R. Jordon, P. Kim, and L. E. Miller
Journal of Neuroscience Methods, 182(2):165–171 (2009)

Conveying Tactile Feedback in Sensorized Hand Neuroprostheses Using a Biofidelic Model of Mechanotransduction
S. S. Kim, A. P. Sripati, R. J. Vogelstein, R. S. Armiger, A. F. Russell, and S. J. Bensmaia
IEEE Trans Biomed Circuits Syst, 3(6):398–404 (2009)


Mechanically driven microtweezers with integrated microelectrodes
Y. Choi, J. D. Ross, B. A. Wester, and M. G. Allen
Journal of Micromechanics and Microengineering, 18(6): 065004 (2008)

Workpiece dynamic analysis and prediction during chatter of turning process
A. A. Cardi, H. Firpi, M. T. Bement, and S. Y. Liang
Mechanical Systems and Signal Processing,22(6):1481–1494 (2008)

The role of broadband inhibition in the rate representation of spectral cues for sound localization in the inferior colliculus
B. J. May, M. Anderson, and M. Roos
Hearing Research, 238(1–2):77–93 (2008)

A silicon central pattern generator controls locomotion in vivo
R. J. Vogelstein, F. Tenore, L. Guevremont, R. Etienne-Cummings, and V. K. Mushahwar
IEEE Transactions on Biomedical Circuits and Systems, 2(3):212–222 (2008)


Genetic programming of conventional features to detect seizure precursors
O. Smart, H. Firpi, and G. Vachtsevanos
Engineering Applications of Artificial Intelligence, 20(8):1070–1085 (2007)

High frequency oscillations detected in epileptic networks using swarmed neuro-artificial features
H. Firpi, O. Smart, G. Worrell, E. Marsh, D. Dlugos, and B. Litt
Annals of Biomedical Engineering, 35(9):1573–1584 (2007)

GP-based artificial features from vibration data applied to fault detection and isolation
H. Firpi and G. Vachtsevanos
Engineering Applications of Artificial Intelligence, 21(4):558–568 (2007)

Epileptic seizure detection using genetically programmed artificial features
H. Firpi, E. Goodman, and J. Echauz
IEEE Transactions on Biomedical Engineering, 54(2):212–224 (2007)

Prediction of upper limb muscle activity from motor cortical discharge during reaching
E. A. Pohlmeyer, S. A. Solla, E. J. Perreault, and L. E. Miller
Journal of Neural Engineering, 4(4):369–379 (2007)

Biomimetic Brain Machine Interfaces for the Control of Movement
A. H. Fagg, N. G. Hatsopoulos, V. Lafuente, K. A. Moxon, S. Nemati, J. M. Rebesco, R. Romo, S. A. Solla, J. Reimer, D. Tkach, E. A. Pohlmeyer, and L. E. Miller
Journal of Neuroscience, 27(44):11824–11846 (2007)

A multi-chip neuromorphic sensory information processing system
R. J. Vogelstein, U. Mallik, E. Culurciello, G. Cauwenberghs, and R. Etienne-Cummings
Neural Computation, 19(9): 2281–2300 (2007)

Dynamically reconfigurable silicon array of spiking neurons with conductance-based synapses
R. J. Vogelstein, U. Mallik, J. T. Vogelstein, and G. Cauwenberghs
IEEE Transactions on Neural Networks, 18(1):253–265 (2007)


On prediction of epileptic seizures by means of genetic programming artificial features
H. Firpi, E. Goodman, and J. Echauz
Annals of Biomedical Engineering, 34(3):515–529 (2006)

Identification of multiple-input systems with highly coupled inputs: application to EMG prediction from multiple intracortical electrodes
D. T. Westwick, E. A. Pohlmeyer, S. A. Solla, L. E. Miller, and E. J. Perreault
Neural Computation, 18(2):329–355 (2006)

Brain-behavioral relationships in reading acquisition are modulated by socioeconomic factors
K. G. Noble, M. Wolmetz, L. G. Ochs, M. J. Farah, and B. D. McCanliss
Developmental Science, 9(6):642–654 (2006)

Dynamic control of the central pattern generator for locomotion
R. J. Vogelstein, F. Tenore, R. Etienne-Cummings, M. A. Lewis, N. V. Thakor, and A. H. Cohen
Biological Cybernetics, 95(6):555–566 (2006)

Phase-dependent effects of spinal cord stimulation on locomotor activity
R. J. Vogelstein, R. Etienne-Cummings, N. V. Thakor, and A. H. Cohen
IEEE Transactions on Neural Systems and Rehabilitation Engineering, 14(3):257–265 (2006)


Neuroscience and the detection of deception
M. Happel
Review of Policy Research, 22(5):667–685 (2005)

Two brain pathways for attended and ignored words
M. Ruz, M. Wolmetz, P. Tudela, and B. D. McCandliss
NeuroImage, 27(4):842–861 (2005)


Overriding the Experts: A Fusion Method for Combining Marginal Classifiers
M. Happel and P. Bock
International Journal on Artificial Intelligence Tools, 10(1&2):157–179 (2001)


Testing the effects of genetic variations using MINIME technology
J. T. Vogelstein, J. V. Vogelstein, and B. Vogelstein
Science, 286:2300–2301 (1999)


Characterization of the yeast transcriptome
V. Velculescu, L. Zhang, W. Zhou, J. Vogelstein, M. A. Basrai, D. E. Bassett Jr., P. Heiter, B. Vogelstein, and K. W. Kinzler
Cell, 88:243–251 (1997)


Book Chapters


Neuromorphic Hardware for Control
K. Mazurek, R. J. Vogelstein, and R. Etienne-Cummings
In: Biohybrid Systems: Nerves, Interfaces and Machines
R. Jung, editor
Germany: Wiley-VCH Verlag & Co (2011)


Cortically-Coupled Computer Vision
P. Sajda, E. A. Pohlmeyer, J. Wang, B. Hanna, L. C. Parra, and S.-F. Chang
In: Brain-Computer Interfaces: Applying our Minds to Human-Computer Interaction
D. Tan and A. Jijholt, editors
Germany: Springer (2010)


Intelligent Control Strategies for Neurostimulation
J. Echauz, H. Firpi, and G. Georgolas
In: Applications of Intelligent Control Strategies to Engineering Systems
K. Valavanis, editor
Germany: Springer (2009)

Control of muscle synergies by cortical ensembles
M. M. Morrow, E. A. Pohlmeyer, and L. E. Miller
In: Progress in Motor Control - A Multidisciplinary Perspective
D. Sternad, editor
New York: Springer (2009)


Mechanical detection of deception: A short review
K. Heckman and M. Happel
In: Educing information: Interrogation: Science and Art—Foundations for the Future
R. Swenson, editor
Washington, DC: National Defense Intelligence College Press (2006)


Saliency-driven image acuity modulation on a reconfigurable silicon array of spiking neurons
R. J. Vogelstein, U. Mallik, G. Cauwenberghs, E. Culurciello, and R. Etienne-Cummings
In: Advances in Neural Information Processing Systems 16
Y. Weiss, B. Scholkopf, and J. Platt, editors
Cambridge, MA: MIT (2005)


Spike timing dependent plasticity in the address domain
R. J. Vogelstein, F. Tenore, R. Philipp, M. S. Adlerstein, D. H. Goldberg, and G. Cauwenberghs
In: Advances in Neural Information Processing Systems 15
S. Becker, S. Thrun, and K. Obermayer, editors
Cambridge, MA: MIT (2003)


Conference Presentations and Proceedings


Particle swarm optimization-based feature selection for cognitive state detection
H. A. Firpi and R. J. Vogelstein
Conf Proc IEEE Eng Med Biol Soc, August 30 – September 3, 2011, pp. 6556–6559 (2011)


WiiEMG: A real-time environment for control of the Wii with surface electromyography
H. Oppenheim, R. S. Armiger, and R. J. Vogelstein
Proceedings of 2010 IEEE International Symposium on Circuits and Systems (ISCAS), May 30, 2010 – June 2, 2010, pp. 957–960 (2010)


Real-time implementation of biofidelic SA1 model for tactile feedback
A. F. Russell, R. S. Armiger, R. J. Vogelstein, S. J. Bensmaia, and R. Etienne-Cummings
Conf Proc IEEE Eng Med Biol Soc, September 2–6, 2009, pp. 185–188 (2009)


Air-Guitar Hero: A real-time video game interface for training and evaluation of dexterous upper-extremity neuroprosthetic control algorithms
R. S. Armiger and R. J. Vogelstein
IEEE Biomedical Circuits and Systems Conference, 2008 (BioCAS 2008), November 20–22, 2008, Baltimore, MD, pp. 121–124 (2008)

An embedded controller for a 7-degree of freedom prosthetic arm
F. Tenore, R. S. Armiger, R. J. Vogelstein, D. S. Wenstrand, S. D. Harshbarger, and K. Englehart
Conf Proc IEEE Eng Med Biol Soc, August 20–25, 2008, Vancouver, British Columbia, Canada, pp. 185–188 (2008)